Materials

Data sets

ER Morrissey, MA Juárez, KJ Denby and NJ Burroughs (2011). Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression (ZIP, 17KB)

ER Morrissey, MA Juárez, KJ Denby and NJ Burroughs (2010). On reverse engineering of gene interaction networks using time course data with repeated measurements (MAT, 25KB)

Code

ER Morrissey, MA Juárez, KJ Denby and NJ Burroughs (2011). Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression (ZIP, 32KB)

ER Morrissey, MA Juárez, KJ Denby and NJ Burroughs (2010). On reverse engineering of gene interaction networks using time course data with repeated measurements (ZIP, 14KB)

ER Morrissey has developed an R-Bioconductor package, GRENITS, which implements the models described in the papers above.

Supplementary materials

ER Morrissey,  MA Juárez, KJ Denby and NJ Burroughs (2011). Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression (PDF, 179KB)

ER Morrissey,  MA Juárez, KJ Denby and NJ Burroughs (2010). On reverse engineering of gene interaction networks using time course data with repeated measurements (PDF, 154KB)